API

Here is the documentation for the Ham objects.

Contents:

• Ham
  • Ham
• ParserFilter
  • ParserFilter
• Taxonomy
  • Taxonomy
• Genome
  • Genome
  • ExtantGenome
  • AncestralGenome
• Genes
  • AbstractGene
  • Gene
  • HOG
• Mapper (genomes)
  • HOGsMap
  • MapResults
  • MapVertical
  • MapLateral
• Utils
  • get_newick_string()
• Tree Profile
  • TreeProfile
• iHam
  • IHAM
• Input validation
  • validate_input()
  • ValidationReport
  • ValidationIssue
  • InputValidationError